Naegleria gruberi is a free-living amoebae widely distributed in soil and freshwater habitats throughout the world characteristically undergoing transformation between the amoebae and flagellated form, and constitutes a model system for the pathogenic Naegleria fowleri. Together with the distantly related Euglenozoa (which include parasitic trypanosomes) and Jakobid flagellates, Naegleria gruberi and N. fowleri are members of the ancient and ecologically diverse clade termed ‘‘JEH’’ for Jakobids – Euglenozoa - Heterolobosea. The thermophilic N. fowleri causes primary amoebic meningoencephalitis (PAM) in humans, which almost invariably leads to death. Cases of PAM are reported worldwide and are related to swimming in warm water, whereby the pathogen enters the brain via the nose.
Naegleria gruberi is a species of Naegleria. It is famous for its ability to change from an amoeba, which lacks a cytoplasmic microtubule cytoskeleton, to a flagellate, which has an elaborate microtubule cytoskeleton, including flagella. This "transformation" includes de novo synthesis of basal bodies (or centrioles).
Naegleria gruberi is a free-living organism that can be extracted from wet soil and freshwater The strain NEG-M is the only Naegleria species that has a fully sequenced genome. Naegleria belongs to the Jakobids, Euglenozoans, and Heteroloboseans (JEH) group. The Naegleria genome sequence has indicated that the amoeboflagellate contains actin and microtubule cytoskeletons, mitotic and meiotic machinery, and several transcription factors. Naegleria's mitochondrial genome encodes some components of a mitochondrial c and c1 maturation system. 
Naegleria's mitochondria resembles the evolutionary intermediate thought to have occurred within the ancestor of all eukaryotes, because of its presence of mitochondrial Fe-hydrogenase and complete aerobic respiration system. The Naegleria genome is able to oxidize glucose, various amino acids and fatty acids through the Krebs cycle.
The ancestor of existing eukaryotes have been thought to contain a fair number of introns. Nearly 36% of Naegleria genes are assumed to contain at least one intron and 17% contain multiple introns. The position of the introns are conserved, indicating that they are ancient.
Naegleria amoeba undergo a closed mitosis, in which the nuclear envelope doesn't break down, but still proceeds through the typical stages. The multitubulin hypothesis predicts that eukaroytes contain multiple tublin genes with distinct properties. Naegleria uses different tubulins for mitosis and flagellar assembly.
Observations suggest that Naegleria is primarily an asexual organism that reproduces by division of its amoebae to produce substantial clonal populations. However, analysis of the genome strain NEG-M revealed that it is a composite of two distinct haplotypes having arisen from an interbreeding population. Therefore, Naegleria is likely to be able to undergo genetic exchange. The NEG-M strain is the heterozygous result of a past mating of two strains, and it appears genetically equipped to mate again. However, further studies still need to be performed.
- "Naegleria". Retrieved 2009-01-17.
- Lillian K. Fritz-Laylin, Simon E. Prochnik, Michael L. Ginger, Joel B. Dacks, Meredith L. Carpenter et al. (2010). "The genome of Naegleria gruberi illuminates early eukaryotic versatility". Cell 140 (5): 631–642. doi:10.1016/j.cell.2010.01.032. PMID 20211133.
- "U.S. Department of Energy Joint Genome Institute (JGI) Naegleria gruberi genome webpage". Retrieved 2011-09-26.
- Lillian K. Fritz-Laylin, Michael L. Ginger, Charles Walsh, Scott C. Dawson & Chandler Fulton (2011). "The Naegleria genome: a free-living microbial eukaryote lends unique insights into core eukaryotic cell biology". Research in Microbiology 162 (6): 607–618. doi:10.1016/j.resmic.2011.03.003.
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