Import Log for ecology literature

  • Started: April 19, 2021 15:42
  • Completed: 15:52:01.000
  • Failed: No.
  • Status: completed

Events (most recent first):

  • 15:52:01.000 (ends) Complete
  • 15:52:01.000 (ends) TOTAL TIME: 89.859020524s
  • 15:52:01.000 (starts) Resource#fix_native_nodes
  • 15:52:01.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:262:in `block (2 levels) in load_csv' << /app/lib/trait_bank/slurp.rb:261:in `each' << /app/lib/trait_bank/slurp.rb:261:in `block in load_csv' << /app/lib/trait_bank/slurp.rb:302:in `break_up_large_files' << /app/lib/trait_bank/slurp.rb:254:in `load_csv'
  • 15:50:39.000 (infos) Running validity checks for traits_755.csv
  • 15:50:39.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 15:50:39.000 (starts) Remove traits
  • 15:50:39.000 (warns) There were NO new pages, skipping...
  • 15:50:39.000 (starts) create_new_pages
  • 15:50:39.000 (starts) PageCreator
  • 15:50:39.000 (starts) restoring vernacular preferences...
  • 15:50:35.000 (starts) #propagate_ids ContentSection
  • 15:50:33.000 (starts) #import ContentSection
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_content_sections.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) ContentSection
  • 15:50:33.000 (starts) #propagate_ids Reference
  • 15:50:33.000 (starts) #import Reference
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_references.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) Reference
  • 15:50:33.000 (starts) #propagate_ids ImageInfo
  • 15:50:33.000 (starts) #import ImageInfo
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_image_info.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) ImageInfo
  • 15:50:33.000 (starts) #propagate_ids Attribution
  • 15:50:33.000 (starts) #import Attribution
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_attributions.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) Attribution
  • 15:50:33.000 (starts) #propagate_ids Medium
  • 15:50:33.000 (starts) #import Medium
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_media.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) Medium
  • 15:50:33.000 (starts) #propagate_ids Article
  • 15:50:33.000 (starts) #import Article
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_articles.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) Article
  • 15:50:33.000 (starts) #propagate_ids Vernacular
  • 15:50:33.000 (starts) #import Vernacular
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_vernaculars.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) Vernacular
  • 15:50:33.000 (starts) #propagate_ids NodeAncestor
  • 15:50:33.000 (starts) #import NodeAncestor
  • 15:50:33.000 (starts) NodeAncestor
  • 15:50:33.000 (starts) #propagate_ids ScientificName
  • 15:50:33.000 (starts) #import ScientificName
  • 15:50:33.000 (starts) ScientificName
  • 15:50:33.000 (starts) #propagate_ids Identifier
  • 15:50:33.000 (starts) #import Identifier
  • 15:50:33.000 (warns) MISSING http://content.eol.org/data/mar_eco_lit_v2/publish_identifiers.tsv [404] (10 bytes); skipping
  • 15:50:33.000 (starts) Identifier
  • 15:50:33.000 (starts) #propagate_ids BibliographicCitation