dcsimg

Brief Summary

provided by EOL authors

Catenaria anguillulaehas been studied in recent years because of its behaviour as a facultative parasite of agriculturally important nematode parasites of crop plants. (JGI-MycoCosm 2015)

References

  • Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I. (2014) MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 42(1):D699-704.
  • For JGI Fungal Program, please cite: Fueling the future with fungal genomics. Grigoriev IV, Cullen D, Goodwin SB, Hibbett D, Jeffries TW, Kubicek CP, Kuske C, Magnuson JK, Martin F, Spatafora JW, Tsang A, Baker SE.(2011) , Mycology. 2(3):192-209.
  • Genome Portal version:7.37 content:986bc4f clustering:b98570e synteny:b98570e gp-edge1.jgi-psf.org Release Date:25-Jun-2015 10:30:24.122 PST Current Date:06-Jul-2015 07:25:32.785 PDT

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JGI-Joint Genome Institute, US Dept. of Energy
bibliographic citation
Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I. (2014) MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 42(1):D699-704. For JGI Fungal Program, please cite: Fueling the future with fungal genomics. Grigoriev IV, Cullen D, Goodwin SB, Hibbett D, Jeffries TW, Kubicek CP, Kuske C, Magnuson JK, Martin F, Spatafora JW, Tsang A, Baker SE.(2011) , Mycology. 2(3):192-209. Genome Portal version:7.37 content:986bc4f clustering:b98570e synteny:b98570e gp-edge1.jgi-psf.org Release Date:25-Jun-2015 10:30:24.122 PST Current Date:06-Jul-2015 07:25:32.785 PDT
author
C Robertson
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Genome

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Although there is a history of light and electron microscopic studies, little molecular work has been done with this fungus, other than phylogenetic systematic studies (James et al., 2006; Porter et al., in prep). A genome sequence forC. anguillulaewill aid the development of probes and primers for additional phylogenetic and environmental sampling studies that would facilitate identification and monitoring of wild isolates. AfterAllomyces macrogynus, this would be only the second member of the fungal phylum Blastocladiomycota with a sequenced genome. These species represent two of the most tractable organisms in the phylum, whereas other genera in the Blastocladiomycota represent obligate plant or insect pathogens that cannot be grown in the lab without their host, or opportunistic pathogens and saprophytes that are difficult to propagate in the lab because of slow growth rates and small fungal "body" size. Genome sequencing of non-model organisms can provide a valuable point of comparison for environmental metagenomic and metatranscriptomic studies.C. anguillulaemay also be considered for its economic importance, as it is a facultative parasite of nematodes that can parasitize crop plants.C. anguillulaemeets DOE criterion as a representative of an un-sampled basal fungal lineage. (JGI-MycoCosm 2015)

Reference

© 1997-2015 The Regents of the University of California.

license
cc-by-3.0
copyright
JGI-Joint Genome Institute, US Dept. of Energy
bibliographic citation
Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I. (2014) MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 42(1):D699-704. For JGI Fungal Program, please cite: Fueling the future with fungal genomics. Grigoriev IV, Cullen D, Goodwin SB, Hibbett D, Jeffries TW, Kubicek CP, Kuske C, Magnuson JK, Martin F, Spatafora JW, Tsang A, Baker SE.(2011) , Mycology. 2(3):192-209. Contact Us Survey 2015 Cite Us Credits Accessibility/Section 508 Disclaimer DOE logo © 1997-2015 The Regents of the University of California. Genome Portal version:7.37 content:986bc4f clustering:b98570e synteny:b98570e gp-edge1.jgi-psf.org Release Date:25-Jun-2015 10:30:24.122 PST Current Date:06-Jul-2015 07:25:32.785 PDT
author
C Robertson
original
visit source
partner site
EOL authors