Stenophragmidium includes 33 children:
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Stenophragmidium ashfellensis Cleary & Wyse Jackson 2007
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Stenophragmidium buckhornensis Ernst, Seuss, Taylor & Nützel 2016
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Stenophragmidium bundoranensis Cleary & Wyse Jackson 2007
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Stenophragmidium catenulus Lu, Xia & Li 1978
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Stenophragmidium conspectum Ariunchimeg 2005
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Stenophragmidium cumulospinosum Yang, Hu & Xia 1988
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Stenophragmidium granulosum Dunaeva 1964
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Stenophragmidium hibernicum Cleary & Wyse Jackson 2007
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Stenophragmidium incrustans Owen 1973
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Stenophragmidium intermurum Xia, Lu & Li 1978
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Stenophragmidium isospinosum Ernst, Schäfer & Reijmer 2005
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Stenophragmidium lamellatum Ernst 2003
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Stenophragmidium magnospinosum Xia, Lu & Li 1978
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Stenophragmidium megistum Perry & Gutschick 1959
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Stenophragmidium mirandum Dunaeva 1964
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Stenophragmidium multispinosum Yang, Hu & Xia 1988
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Stenophragmidium neimongolense Liu 1976
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Stenophragmidium obscurum Perry & Gutschick 1959
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Stenophragmidium paramirandum Ernst, Schäfer & Reijmer 2005
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Stenophragmidium pleniramosum Yang, Hu & Xia 1988
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